A internal function used for the plotting of trees

plot_tree(
  tree,
  HI = NULL,
  color_by = NULL,
  linewidth = 1,
  pointsize = 1,
  textsize = 2.5,
  labeller_function = NULL,
  keep_conf_label = FALSE,
  subset = NULL
)

Arguments

tree: object of class phylo to plot.
HI: (optional) HI of the tree (unused).
color_by: (optional) lookup table with color labels (NULL).
linewidth: (optional) numeric value defining linewidth of tree edges (1).
pointsize: (optional) numeric value defining point size of tree tips (1).
textsize: (optional) numeric value defining linewidth of tree edges (2.5).
labeller_function: (optional) HI of the tree (unused).
keep_conf_label: (optional) Flat indicating if `confidence label' should be keeped (default: FALSE).
subset: (optional) character vector defining a subset of samples to plot.

Value

ggplot object

Examples

plot_tree(ape::rtree(5))