Function reference • MLLPT

All functions
`add_lowpass_sampled()`	MLE assignment of (low-depth) samples to a tree
`example_lp_data`	Simulated low-pass WGS dataset for MLLPT
`get_mutation_ids_per_edge()`	Internal function used to get mutation ids for each edge of the tree.
`load_genotyping_file()`	Function to load genotyping data from a file
`plot_lp_loglik()`	Plot showing log-likelihood of all possible edges.
`plot_lp_loglik_edge()`	Plot showing log-likelihood of fraction mutated from most likely edge.
`plot_lp_position_edge()`	Plot showing distribution of edge positions during boostraping.
`plot_sample_data()`	Plot showing ML estimate of sample parameters.
`plot_tree()`	A internal function used for the plotting of trees
`plot_tree_and_cn_data()`	Plot showing tree and CNA data site-by-site.
`remove_root_tip()`	Internal function that removes the reference tip from a tree
`set_lp_tiplength()`	Scale edge length of added LP samples for plotting

Reference