Plot showing tree and CNA data site-by-site.

plot_tree_and_cn_data(
  x,
  cn_data,
  title = "",
  dropped_samples = NULL,
  plot_tree_function = NULL,
  labeller_function = function(x) x,
  ...
)

Arguments

x: Object returned from 'add_lowpass_sampled' or a object of type 'phylo'.
cn_data: CNA data as a named list of genomic ranges objects with a 'cn' metadata column.
title: (optional) title for the plot.
dropped_samples: (optional) vector of dropped samples.
plot_tree_function: (optional) function to plot the tree object.
labeller_function: (optional) function returning a modified version of sample labels.
...: (optional) arguments passed to the 'plot_tree_function' function.

Value

A grob.