A TEMULATER simulation

Type the name of the class to see its methods

Fields

print

Print the object

print_cell_types

Print contained cell types

run

Start or restart the simulation

  • Parameter: verbose - bool, Flag indicating if progress should be printed.

  • Returns: bool, Indicating success.

sample

Sample mutations from the population

  • Parameter: min_vaf - double, Minimum VAF reported.

  • Parameter: purity - double, Assumed purity of the tumour.

  • Parameter: depth - double, Sequencing depth.

  • Parameter: depth_model - int, Distribution of the sequencing depth (1: poisson, 2: overdispersed beta binomial (default), 3: fixed).

  • Returns: data.frame containing mutation information.